| QTL Map Information |
|---|
| Chromosome: | 9 |
| QTL Peak Location: | 110.83 (cM) |
| QTL Span: | 110.83-110.83 (cM)
102.7-102.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs110083717 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | SMOC2 (SPARC related modular calcium binding 2) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Chinese Holstein cattle. |
| Breeds associated:
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| Design: | Animals were genotyped using a 26K SNP chip, with data imputed to 50K, and analyzed for blood insulin, triiodothyronine, and thyroxine levels. A total of 47,396 SNPs were used for analysis. |
| Analysis: | The FarmCPU algorithm and a linear mixed model were used. |
| Software: | PLINK, Beagle |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Gan Q, Li Y, Liu Q, Lund M, Su G, Liang X |
| Affiliation: | College of Animal Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, China |
| Title: | Genome-wide association studies for the concentrations of insulin, triiodothyronine, and thyroxine in Chinese Holstein cattle |
| Journal: | Tropical animal health and production, 2020, 52(4):1655-1660 |
| Links: |
PubMed | Abstract | List all data
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