| QTL Map Information |
|---|
| Chromosome: | 12 |
| QTL Peak Location: | 62.39 (cM) |
| QTL Span: | 62.39-62.39 (cM)
47.5-47.5 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs43691372 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 4.47E-5 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were purebred and crossbred beef cattle in Ireland. |
| Breeds associated:
n/a
|
| Design: | Animals were genotyped using either the IDBv3 chip or Illumina BovineHD BeadChip, with data imputed to IDBv3, and analyzed for RFI, ADG, and feed intake. A total of 36,496 SNPs were used for analysis. |
| Analysis: | Mixed linear models and the EMMAX method were used for GWAS. Following breed-specific GWAS, meta-analyses were carried out for each trait across breeds using a Z-score method. |
| Software: | FImpute, SVS, METAL |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Higgins MG, Fitzsimons C, McClure MC, McKenna C, Conroy S, Kenny DA, McGee M, Waters SM, Morris DW |
| Affiliation: | Discipline of Biochemistry, National University of Ireland, Galway, Ireland |
| Title: | GWAS and eQTL analysis identifies a SNP associated with both residual feed intake and GFRA2 expression in beef cattle |
| Journal: | Scientific reports, 2019, 8(1): 14301 |
| Links: |
PubMed | Abstract | List all data
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