Release 56
(Apr 24, 2025)

QTL 171462 Description:

 Trait Information
Trait name: Somatic cell score Vertebrate Trait Ontology: Milk somatic cell quantity
Reported name: (n/a) Product Trait Ontology: Milk somatic cell count
Symbol: SCS Clinical Measurement Ontology: Milk somatic cell score
 QTL Map Information
Chromosome:18
QTL Peak Location:0.00 (cM)
QTL Span:0.00-0.00 (cM)
42.1-42.1 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs109462250
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:SNP
Analysis type:Association
Model tested:Mendelian
Test base:n/a
Threshold significance level:Significant
P_values<0.01
Dominance effect:n/a
Additive effect:n/a
Associated Gene:MIR2899 (microRNA mir-2899)
Cis/Trans acting type:
Links:   Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Animals were Holstein cattle.
     Breeds associated:
    Design:Animals were genotyped for SNPs in microRNAs and analyzed for somatic cell score.
    Analysis:General least-squares models were used.
    Software:SPSS, SAS
    Notes: 
    Links:Edit

     Reference
    Authors:Jiang Q, Zhao H, Li R, Zhang Y, Liu Y, Wang J, Wang X, Ju Z, Liu W, Hou M, Huang J
    Affiliation:College of Life Sciences, Shandong Normal University, Jinan, 250014, Shandong, China
    Title:In silico genome-wide miRNA-QTL-SNPs analyses identify a functional SNP associated with mastitis in Holsteins
    Journal:BMC genetics, 2019, 20(1): 46
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  
    User inputs on reference #31096910
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  • Cite this Data:

    Animal QTLdb: QTL171462 was published in 2019, and was curated into QTLdb on 2019-06-10. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:171462

     

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