| QTL Map Information |
|---|
| Chromosome: | 3 |
| QTL Peak Location: | 23.10 (cM) |
| QTL Span: | 23.10-23.10 (cM)
23.2-23.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs380999539 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
P_values | 0.0170 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | NOTCH2 (notch receptor 2) |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #167537
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were US Holstein cattle. |
| Breeds associated:
|
| Design: | Concordance between quantitative trait locus genotype as determined by the a posteriori granddaughter design and marker genotype was determined for 30 trait-by-chromosomal segment effects segregating in the US Holstein population. |
| Analysis: | For each quantitative trait locus, effects of the 30 polymorphisms with highest concordance scores for the analyzed trait were computed by stepwise regression for predicted transmitting abilities of 26,750 bulls with progeny test and imputed genotypes. |
| Software: | SAMtools |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Weller J I, Bickhart D M, Wiggans G R, Tooker M E, O'Connell J R, Jiang J, Ron M, VanRaden P M |
| Affiliation: | USDA, Agricultural Research Service, Animal Genomics and Improvement Laboratory, Beltsville, MD 20705-2350 |
| Title: | Determination of quantitative trait nucleotides by concordance analysis between quantitative trait loci and marker genotypes of US Holsteins |
| Journal: | Journal of dairy science, 2018, 101(10): 9089-9107 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #30031583
Add your comments
Note similar findings
Note contradictions
|
