| QTL Map Information |
|---|
| Chromosome: | 6 |
| QTL Peak Location: | 59.02 (cM) |
| QTL Span: | 59.02-59.02 (cM)
50.2-50.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs41625390 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 3.00E-5 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Holstein cows. |
| Breeds associated:
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| Design: | Animals were genotyped for 55,074 SNPs using the Illumina Bovine SNP50 BeadChip and analyzed for Johne's disease tolerance. A total of 45,789 SNPs were used in the analysis. |
| Analysis: | The likelihood ratio test and the Wald statistical test were used to test for an association between each SNP and disease tolerance. |
| Software: | R software, PLINK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Zanella R, Settles ML, McKay SD, Schnabel R, Taylor J, Whitlock RH, Schukken Y, Van Kessel JS, Smith JM, Neibergs HL. |
| Affiliation: | Department of Animal Sciences, Washington State University, ASLB 210, Pullman, WA 99164, USA |
| Title: | Identification of loci associated with tolerance to Johne's disease in Holstein cattle. |
| Journal: | Animal genetics, 2011, 42(1): 28-38 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Peak tolerance |
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