Release 56
(Apr 24, 2025)

QTL 15950 Description:

 Trait Information
Trait name: Somatic cell score Vertebrate Trait Ontology: Milk somatic cell quantity
Reported name: Somatic cell score Product Trait Ontology: Milk somatic cell count
Symbol: SCS Clinical Measurement Ontology: Milk somatic cell score
 QTL Map Information
Chromosome:2
QTL Peak Location:94 (cM)
QTL Span:58.14-58.34 (cM)
61.5-61.7 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:
Analysis type:Association
Model tested:Mendelian
Test base:n/a
Threshold significance level:Significant
P_values<0.01
Dominance effect:n/a
Additive effect:n/a
Associated Gene:CXCR1 (chemokine (C-X-C motif) receptor 1)
Cis/Trans acting type:
Links:   NCBI GeneDB  |  Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Animals were Chinese Holstein cattle.
     Breeds associated:
    Design:Animals were genotyped for four SNPs in CXCR1 and analyzed for somatic cell score.
    Analysis:The general linear model procedure was used.
    Software:SAS
    Notes: 
    Links:Edit

     Reference
    Authors:Chen R, Yang Z, Ji D, Mao Y, Chen Y, Zhang Y, Hamza, Wang X, Li Y
    Affiliation:Animal Science and Technology College, Yangzhou University, Yangzhou, Jiangsu, China.
    Title:SNPs of CXCR1 gene and its associations with somatic cell score in Chinese Holstein cattle
    Journal:Anim Biotechnol., 2011, 22(3):133-42
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  

     Additional Information
    Comments:c.-1830A>G
    User inputs on reference #21774621
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  • Cite this Data:

    Animal QTLdb: QTL15950 was published in 2011, and was curated into QTLdb on 2012-07-31. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:15950

     

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