| QTL Map Information |
|---|
| Chromosome: | 22 |
| QTL Peak Location: | 58.30 (cM) |
| QTL Span: | 58.22-58.38 (cM)
38.9-39.0 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs109152049 |
| Peak: | rs42010850 |
| Lower, "Significant": | rs132640064 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | Mendelian |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
VARIANCE | 1.20% | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #156863
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were Nellore cattle. |
| Breeds associated:
|
| Design: | Animals were genotyped using either the Illumina BovineHD BeadChip or BovineSNP50 v2 BeadChip (with data imputed to HD) and analyzed for feet and leg conformation. A total of 407,730 SNPs were used for analysis. |
| Analysis: | Single-trait threshold animal models were used. SNP effects were estimated using the wssGBLUP method. |
| Software: | FImpute, R software |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Vargas G, Neves HHR, Camargo GMF, Cardoso V, Munari DP, Carvalheiro R |
| Affiliation: | Conselho Nacional de Desenvolvimento Científico e Tecnológico, CEP, Brasília, Brazil |
| Title: | Genome-wide association study and functional analysis of feet and leg conformation traits in Nellore cattle |
| Journal: | Journal of animal science, 2018, 96(5): 1617-1627 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | categorical score |
User inputs on reference #29733418
Add your comments
Note similar findings
Note contradictions
|
