| QTL Map Information |
|---|
| Chromosome: | 7 |
| QTL Peak Location: | 48.93 (cM) |
| QTL Span: | 48.93-48.93 (cM)
40.6-40.6 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs110601314 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Holstein cattle. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina BovineSNP50 BeadChip, with data imputed to the BovineHD BeadChip SNP panel, and analyzed for incidence of Mycobacterium avium ssp. paratuberculosis (MAP) infection. |
| Analysis: | GWAS was performed using a two-stage logistic regression approach. |
| Software: | FImpute, GenABEL in R |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Mallikarjunappa Sanjay, Sargolzaei M, Brito L F, Meade K G, Karrow N A, Pant S D, |
| Affiliation: | Graham Centre for Agricultural Innovation, NSW DPI and Charles Sturt University, Locked Bag 588, Wagga Wagga, NSW 2678, Australia |
| Title: | Short communication: Uncovering quantitative trait loci associated with resistance to Mycobacterium avium ssp. paratuberculosis infection in Holstein cattle using a high-density single nucleotide polymorphism panel |
| Journal: | Journal of dairy science, 2018, 101(8):7280-7286 |
| Links: |
PubMed | Abstract | List all data
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