| QTL Map Information |
|---|
| Chromosome: | 21 |
| QTL Peak Location: | 39.94 (cM) |
| QTL Span: | 39.94-39.94 (cM)
26.8-26.8 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs29025761 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 3.45E-05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Holstein cattle. |
| Breeds associated:
|
| Design: | Animals were genotyped for 55,074 SNPs on the BovineSNP50 SNP chip and analyzed for tissue and fecal presence of Mycobacterium avium ssp. paratuberculosis. |
| Analysis: | Standard 1-d.f. allelic, 1-d.f. dominance, 1-d.f. recessive and 2-d.f. (genotypic) tests of association with genotype between cases and controls were calculated. Cochran-Mantel-Haenszel tests were performed upon evidence of stratification. |
| Software: | R software, PLINK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Settles M, Zanella R, McKay SD, Schnabel RD, Taylor JF, Whitlock R, Schukken Y, Van Kessel JS, Smith JM, Neibergs H |
| Affiliation: | Department of Animal Sciences, Washington State University, Pullman, WA 99164, USA. |
| Title: | A whole genome association analysis identifies loci associated with Mycobacterium avium subsp. paratuberculosis infection status in US holstein cattle |
| Journal: | Animal Genetics, 2009, 40(5):655-62 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Tissue positive |
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