| QTL Map Information |
|---|
| Chromosome: | 17 |
| QTL Peak Location: | 39.11 (cM) |
| QTL Span: | 39.11-39.11 (cM)
29.7-29.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs110127535 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
P_values | 1.45E-7 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were primiparous Holstein-Friesian cows. |
| Breeds associated:
|
| Design: | Animals were genotyped using a 50k SNP chip, with data imputed to 777k then to whole-genome sequence level, and analyzed for milk fatty acid composition. The final data set included 1,157,678 called sites on BTA17. |
| Analysis: | An animal model was used. |
| Software: | GATK, Beagle, ASReml, R software, PLINK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Duchemin S I, Bovenhuis H, Megens H-J, Van Arendonk J A M, Visker M H P W |
| Affiliation: | Animal Breeding and Genomics Centre, Wageningen University, PO Box 338, 6700 AH Wageningen, the Netherlands |
| Title: | Fine-mapping of BTA17 using imputed sequences for associations with de novo synthesized fatty acids in bovine milk |
| Journal: | Journal of dairy science, 2017, 100(11): 9125-9135 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | summer milk samples |
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