| QTL Map Information |
|---|
| Chromosome: | 5 |
| QTL Peak Location: | 104.78 (cM) |
| QTL Span: | 104.78-104.78 (cM)
94.4-94.4 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs460885789 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | PTPRO (protein tyrosine phosphatase, receptor type O) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Nordic Holstein cattle. |
| Breeds associated:
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| Design: | Animals were genotyped Illumina BovineSNP50 BeadChip, with genotypes imputed to BovineHD then to whole-genome sequence. A total of 15,419,550 SNPs were used for analysis. |
| Analysis: | A modified linear mixed model was used. |
| Software: | EMMAX |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Wu X, Guldbrandtsen B, Nielsen US, Lund Mogens S, Sahana G |
| Affiliation: | Center for Quantitative Genetics and Genomics, Department of Molecular Biology and Genetics, Aarhus University, 8830 Tjele, Denmark |
| Title: | Association analysis for young stock survival index with imputed whole-genome sequence variants in Nordic Holstein cattle |
| Journal: | Journal of dairy science, 2017, 100(8): 6356-6370 |
| Links: |
PubMed | Abstract | List all data
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