| QTL Map Information |
|---|
| Chromosome: | 2 |
| QTL Peak Location: | 96.27 (cM) |
| QTL Span: | 96.27-96.27 (cM)
105.1-105.1 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs210733747 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
P_values | 6.31E-12 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #139835
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were Danish Holstein, Jersey, Danish Red, French Holstein, Montbeliarde, and Normande bulls. |
| Breeds associated:
|
| Design: | Animals were genotyped using either the BovineSNP50 or BovineHD BeadChip, with data imputed for whole-genome sequence, and analyzed for milk, fat, and protein yields. A total of 24,550,115 SNPs and small indels were used for analysis. |
| Analysis: | Both single- and multi-breed GWAS were performed, and three meta-analysis methods were used for comparison with multi-breed GWAS results. |
| Software: | Beagle, IMPUTE2, R software, METAL |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | van den Berg I, Boichard D, Lund MS |
| Affiliation: | Center for Quantitative Genetics and Genomics, Department of Molecular Biology and Genetics, Aarhus University, DK-8830 Tjele, Denmark |
| Title: | Comparing power and precision of within-breed and multibreed genome-wide association studies of production traits using whole-genome sequence data for 5 French and Danish dairy cattle breeds |
| Journal: | Journal of dairy science, 2016, 99(11): 8932-8945 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #27568046
Add your comments
Note similar findings
Note contradictions
|
