| QTL Map Information |
|---|
| Chromosome: | 5 |
| QTL Peak Location: | 117.75 (cM) |
| QTL Span: | 117.75-117.75 (cM)
106.4-106.4 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs109116974 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | 8.95 |
| Additive effect: | 9.09 |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Holstein cattle. |
| Breeds associated:
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| Design: | Animals were genotyped with various SNP arrays, with data imputed to 50K SNP data, and analyzed for milk, production, and fertility traits. |
| Analysis: | A whole-genome, single-marker scan for additive, dominance, and imprinting effects was performed using a two-step approach: a mixed model with genomic relationship matrices to generate residuals, followed by a GWAS scan using residuals from the mixed model as the phenotype. |
| Software: | MMAP, Beagle, GCTA |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Jiang J, Shen B, O'Connell JR, VanRaden PM, Cole JB, Ma L |
| Affiliation: | Department of Animal and Avian Sciences, University of Maryland, 2123 Animal Science Building, College Park, MD, 20742, USA |
| Title: | Dissection of additive, dominance, and imprinting effects for production and reproduction traits in Holstein cattle |
| Journal: | BMC genomics, 2017, 18(1): 425 |
| Links: |
PubMed | Abstract | List all data
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| Additional Information |
|---|
| Comments: | yield deviation; dominance association |
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