| QTL Map Information |
|---|
| Chromosome: | X |
| QTL Peak Location: | 86.88 (cM) |
| QTL Span: | 86.88-86.88 (cM)
51.4-51.4 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs29025370 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
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| Animals: | The data set consisted of 445 Chinese Holstein dairy cows. |
| Breeds associated:
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| Design: | Animals were genotyped using the GGP BovineLD V3 SNP chip and analyzed for milk production. The final marker set included 441 animals with 20,326 SNP genotypes. |
| Analysis: | Both fixed-effect (FLM) and random-effect models (MLM) were used in the study. |
| Software: | PLINK(v1.07)and GCTA (v1.2.4) |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Yue SJ, Zhao YQ, Gu XR, Yin B, Jiang YL, Wang ZH, Shi KR |
| Affiliation: | College of Animal Science and Technology, Shandong Agricultural University, Shandong Key Laboratory of Animal Bioengineering and Disease Prevention, Taian, Shandong, 271018, P. R. China. |
| Title: | A genome-wide association study suggests new candidate genes for milk production traits in Chinese Holstein cattle |
| Journal: | Animal Genetics, 2017, 48(6):677-681 |
| Links: |
PubMed | Abstract | List all data
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| Additional Information |
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| Comments: | Significant SNPs identified by using fixed-effect model (FLM) |
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