| QTL Map Information |
|---|
| Chromosome: | 13 |
| QTL Peak Location: | 15.12 (cM) |
| QTL Span: | 14.95-15.29 (cM)
12.5-12.8 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs109580845 |
| Peak: | |
| Lower, "Significant": | rs137692724 |
| Lower, "Suggestive": | n/a |
| Marker type: | CNV |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Suggestive |
 |
P_values | <0.10 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Nelore cattle. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina BovineHD BeadChip, and data was used to infer CNV regions in the genome. GWAS was performed to determine association of CNV with EBV for shear force. |
| Analysis: | Genome-wide association analysis with the SF-EBVs was carried out using the corresponding functionality for CN polymorphism data encoded in a probe-by-probe fashion. |
| Software: | PLINK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Silva VH, Regitano LC, Geistlinger L, Pértille F, Giachetto PF, Brassaloti RA, Morosini NS, Zimmer R, Coutinho LL |
| Affiliation: | Animal Biotechnology Laboratory, Animal Science Department, University of São Paulo (USP)/Luiz de Queiroz College of Agriculture (ESALQ), Piracicaba, São Paulo, Brazil |
| Title: | Genome-Wide Detection of CNVs and Their Association with Meat Tenderness in Nelore Cattle |
| Journal: | PloS one, 2016, 11(6): e0157711 |
| Links: |
PubMed | Abstract | List all data
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| Additional Information |
|---|
| Comments: | EBV |
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