Release 56
(Apr 24, 2025)

QTL 11398 Description:

 Trait Information
Trait name: Fat color Vertebrate Trait Ontology: White adipose morphology trait
Trait details: fat colour of biopsy samples Product Trait Ontology: n/a
Symbol: FATCOL Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:15
QTL Peak Location:22.9 (cM)
QTL Span:14.74-14.94 (cM)
11.4-11.6 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:-
Analysis type:Association
Model tested:Mendelian
Test base:n/a
Threshold significance level:Significant
P_values<0.01
Dominance effect:n/a
Additive effect:n/a
Associated Gene:BCO2 (beta-carotene oxygenase 2)
Cis/Trans acting type:
Links:   Edit  |   Map view

 Extended information:
(none)

User inputs on QTL #11398
  • Add your annotations
  • Add your comments
  • Report problems
  •  QTL Experiment in Brief
    Animals:Animals were Jersey x Limousin or Jersey cattle.
     Breeds associated:
    Design:Animals were genotyped for SNPs in BCO2 and analyzed for fat color.
    Analysis:ANOVA was used for association analysis.
    Software:GenStat, QTL Express
    Notes: 
    Links:Edit

     Reference
    Authors:Tian R, Pitchford WS, Morris CA, Cullen NG, Bottema CD
    Affiliation:School of Agriculture, Food and Wine, University of Adelaide, Australia; AgResearch, Ruakura Research Centre, Hamilton, New Zealand
    Title:Genetic variation in the beta, beta-carotene-9', 10'-dioxygenase gene and association with fat colour in bovine adipose tissue and milk.
    Journal:Animal genetics, 2010, 41(3): 253-9
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  

     Additional Information
    Comments:W80X
    User inputs on reference #19968649
  • Add your comments
  • Note similar findings
  • Note contradictions
  • Cite this Data:

    Animal QTLdb: QTL11398 was published in 2010, and was curated into QTLdb on 2010-03-29. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:11398

     

    © 2003-2025: USA · USDA · NRPSP8 · Program to Accelerate Animal Genomics Applications. Contact: Bioinformatics Team