| QTL Map Information |
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| Chromosome: | 6 |
| QTL Peak Location: | 97.73 (cM) |
| QTL Span: | 97.19-98.28 (cM)
87.2-87.3 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs383592328 |
| Peak: | rs383561794 |
| Lower, "Significant": | rs109096510 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Holstein, Danish Jersey, and Nordic Red Dairy Cattle.
Animal breed (IDs) involved: |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina BovineSNP50 BeadChip, with data imputed to whole-genome sequencing variants, and analyzed for longevity. A total of 22,751,039 biallelic variants were present in the imputed sequence data. |
| Analysis: | A modified linear mixed model was used. Data for the three breeds were first analyzed separately, then meta-analysis was performed. |
| Software: | IMPUTE2, Minimac2, EMMAX, METAL, DMU |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Zhang Q, Guldbrandtsen B, Thomasen JR, Lund MS, Sahana G |
| Affiliation: | Center for Quantitative Genetics and Genomics, Department of Molecular Biology and Genetics, Aarhus University, DK-8830 Tjele, Denmark |
| Title: | Genome-wide association study for longevity with whole-genome sequencing in 3 cattle breeds |
| Journal: | Journal of dairy science, 2016, 99(9): 7289-98 |
| Links: |
PubMed | Abstract | List all data
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