Release 56
(Apr 24, 2025)

This linkage-map based data has been obsolete
(see Release notes 51, 52, 53). Information
provided here is only for retrospective online
support of publications that used this data.

QTL 10086 Description:

 Trait Information
Trait name: Somatic cell score Vertebrate Trait Ontology: Milk somatic cell quantity
Reported name: Somatic cell score Product Trait Ontology: Milk somatic cell count
Symbol: SCS Clinical Measurement Ontology: Milk somatic cell score
 QTL Map Information
Chromosome:9
QTL Peak Location:107.6 (cM)
QTL Span:103.7-109.2 (cM)
94.2-99.2 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":BMS1943
Peak:
Lower, "Significant":BMS1967
Lower, "Suggestive":n/a
Marker type:Microsatellites
Analysis type:QTL
Model tested:Mendelian
Test base:n/a
Threshold significance level:Significant
LikelihoodR9.9
P_values<0.05
Dominance effect:n/a
Additive effect:n/a
Associated Gene:n/a
Cis/Trans acting type:
Links:   NCBI GeneDB  |  Edit  |   Map view

 Extended information:
(none)

User inputs on QTL #10086
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  •  QTL Experiment in Brief
    Animals:Animals were Swedish Red and White, Finnish Ayrshire, and Danish Red.
     Breeds associated:
    Design:A granddaughter design was used. Animals were genotyped for 67 microsatellite and SNP markers on chromosome 9 and analyzed for udder and milk yield traits.
    Analysis:Linkage, linkage disequilibrium, and combined linkage disequilibrium linkage analyses were used. Analyses were also performed for pleotropic and linked QTL.
    Software:GDQTL, DMU
    Notes: 
    Links:Edit

     Reference
    Authors:Sahana, G; Lund, M S; Andersson-Eklund, L; Hastings, N; Fernandez, A; Iso-Touru, T; Thomsen, B; Viitala, S; Sorensen, P; William
    Affiliation:Department of Genetics and Biotechnology, Faculty of Agricultural Sciences, Aarhus University, Research Centre Foulum, DK-8830 Tjele, Denmark
    Title:Fine-mapping QTL for mastitis resistance on BTA9 in three Nordic red cattle breeds.
    Journal:Animal genetics, 2008, 39 (4): 354-62
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  

     Additional Information
    Comments:linkage analysis
    User inputs on reference #18462482
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  • Cite this Data:

    Animal QTLdb: QTL10086 was published in 2008, and was curated into QTLdb on 2009-12-18. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:10086

     

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