| QTL Map Information |
|---|
| Chromosome: | 3 |
| QTL Peak Location: | 44.0 (cM) |
| QTL Span: | 24.31-24.51 (cM)
22.8-23.0 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | S1PR1 (sphingosine-1-phosphate receptor 1) |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Japanese Black cattle. |
| Breeds associated:
|
| Design: | Animals were genotyped for 2 SNPs in EDG1 and analyzed for marbling and subcutaneous fat thickness. |
| Analysis: | Analysis was performed using the MIXED and GLM procedures of SAS. |
| Software: | SAS, MTDFREML |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Yamada, T; Itoh, M; Nishimura, S; Taniguchi, Y; Miyake, T; Sasaki, S; Yoshioka, S; Fujita, T; Shiga, K; Morita, M; Sasaki, Y |
| Affiliation: | Laboratory of Animal Breeding and Genetics, Graduate School of Agriculture, Kyoto University, Sakyoku, Kyoto 606-8502, Japan; Beef Information & Genetics Institute, Inc., Nango 2-36-6, Otsu, Shiga 520-0865, Japan |
| Title: | Association of single nucleotide polymorphisms in the endothelial differentiation sphingolipid G-protein-coupled receptor 1 gene with marbling in Japanese Black beef cattle. |
| Journal: | Animal genetics, 2009, 40 (2): 209-16 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | c.*446G>A; in paternal half-sib Japanese Black steers from sires heterozygous for SNPs in EDG1; EBV |
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