| QTL Map Information |
|---|
| Chromosome: | 7 |
| QTL Peak Location: | 116.7 (cM) |
| QTL Span: | 70.92-71.12 (cM)
57.9-58.1 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | |
| Analysis type: | Association |
| Model tested: | Epistatic |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
F_Stat | 5.73 | | P_values | 0.00300 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | CAST (calpastatin) |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were from a variety of breeds, including Angus, Brahman, Belmont Red, Hereford, Murray Grey, Santa Gertrudis (Brahman x Shorthorn), and Shorthorn. |
| Breeds associated:
n/a
|
| Design: | Animals were genotyped for SNPs in calpain 1 and calpastatin and analyzed for meat tenderness. |
| Analysis: | Analyses were carried out for SNP association with shear force, as well as for epistatic interaction between SNPs. |
| Software: | ASReml, EPEE |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Barendse, W; Harrison, B E; Hawken, R J; Ferguson, D M; Thompson, J M; Thomas, M B; Bunch, R J |
| Affiliation: | Commonwealth Scientific and Industrial Research Organization Livestock Industries and Cooperative Research Centre for Cattle and Beef Quality and Beef Genetic Technologies, Queensland Bioscience Precinct, St. Lucia 4067, Queensland, |
| Title: | Epistasis between calpain 1 and its inhibitor calpastatin within breeds of cattle. |
| Journal: | Genetics, 2007, 176 (4): 2601-10 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | c.155C>T |
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QTL10000