Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of limb traits traits:
21
Number of QTL / associations found:
4,053
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are limb traits traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
1228.47816
29
3.373497e-240
2.530123e-239
Chromosome 1
7380.37461
29
9e-41
1.350000e-40
Chromosome 2
18.46782
29
0.9341757
9.995135e-01
Chromosome 3
114.15705
29
4.724082e-12
6.161846e-12
Chromosome 4
506.79951
29
1.152063e-88
3.141990e-88
Chromosome 5
3681.63894
29
9e-41
1.350000e-40
Chromosome 6
67.89783
29
5.847086e-05
7.308857e-05
Chromosome 7
3.73212
29
0.998329325823115
9.995135e-01
Chromosome 8
489.20361
29
4.743198e-85
1.185799e-84
Chromosome 9
262.57140
29
1.830302e-39
2.614717e-39
Chromosome 10
438.28134
29
1.236476e-74
2.649591e-74
Chromosome 11
895.46268
29
9.8013e-170
4.200557e-169
Chromosome 12
742.19838
29
1.494050e-137
4.980167e-137
Chromosome 13
848.89266
29
6.186488e-160
2.319933e-159
Chromosome 14
45.45240
29
0.02657781
3.189337e-02
Chromosome 15
1290.03273
29
2.804535e-253
2.804535e-252
Chromosome 16
302.30214
29
2.849939e-47
5.343636e-47
Chromosome 17
30.03273
29
0.4123709
4.581899e-01
Chromosome 18
140.83062
29
1.229597e-16
1.676723e-16
Chromosome 19
471.91872
29
1.657509e-81
3.825021e-81
Chromosome 20
10.19844
29
0.9995135
9.995135e-01
Chromosome 21
316.16739
29
5.071345e-50
1.014269e-49
Chromosome 22
699.85650
29
1.060171e-128
3.180513e-128
Chromosome 23
36699.29697
29
9e-41
1.350000e-40
Chromosome 24
1099.40061
29
8.076117e-213
4.845670e-212
Chromosome 25
1782.96531
29
9e-41
1.350000e-40
Chromosome 26
35.44191
29
0.1903941
2.196855e-01
Chromosome 27
1073.41080
29
2.575235e-207
1.287617e-206
Chromosome 28
1465.55598
29
1.203059e-290
1.804589e-289
Chromosome 29
1526.55069
29
1.186310e-303
3.558930e-302
Chi-squared (χ2) test: Which of the 21 limb traits traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Digital cushion thickness
437.60165
20
3.124931e-80
3.281178e-79
Digital dermatitis
1898.04825
20
9e-41
6.300000e-40
Feet and leg conformation
185.4686
20
8.22621e-29
2.159380e-28
Foot angle
195.0098
20
1.08945e-30
3.268350e-30
Foot diagonal
78.4706
20
7.126596e-09
8.314362e-09
Foot rot
844.87142
20
4.167875e-166
8.752537e-165
Front leg conformation
68.22033
20
3.546298e-07
3.919593e-07
Heel depth
162.46479
20
2.507785e-24
4.787590e-24
Heel horn erosion
134.56446
20
5.398797e-19
7.558316e-19
Hind leg conformation
53.52055
20
6.811328e-05
7.151894e-05
Hoof and leg disorders
221.62438
20
5.660057e-36
2.971530e-35
Hoof trimming status
91.11364
20
4.731408e-11
5.844680e-11
Interdigital dermatitis
152.69108
20
1.916393e-22
3.095712e-22
Interdigital hyperplasia
134.64155
20
5.22106e-19
7.558316e-19
Laminitis
33.22364
20
0.03188194
3.188194e-02
Rear leg placement - rear view
216.71089
20
5.407462e-35
2.271134e-34
Rear leg placement - side view
169.09196
20
1.301481e-25
3.036789e-25
Sole hemorrhage
160.22565
20
6.792079e-24
1.188614e-23
Sole ulcer
207.48821
20
3.693186e-33
1.292615e-32
Toe ulcer
167.33844
20
2.850963e-25
5.987022e-25
White line disease
105.16752
20
1.481300e-13
1.944206e-13
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
63667.570050
Number of traits:
21
df
=
580
Number of QTLs:
4,053
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
