Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of conformation traits:
22
Number of QTL / associations found:
3,841
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are conformation traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
4179.87416
29
9e-41
1.588235e-40
Chromosome 1
144.17722
29
3.151101e-17
4.726652e-17
Chromosome 2
38.49010
29
0.1118192
1.290222e-01
Chromosome 3
0.00022
29
0.998329325823115
9.983293e-01
Chromosome 4
176.32098
29
4.800443e-23
7.579647e-23
Chromosome 5
3916.17204
29
9e-41
1.588235e-40
Chromosome 6
2514.38088
29
9e-41
1.588235e-40
Chromosome 7
1126.45060
29
1.498369e-218
1.498369e-217
Chromosome 8
116.45524
29
1.948172e-12
2.783103e-12
Chromosome 9
176.32098
29
4.800443e-23
7.579647e-23
Chromosome 10
793.76440
29
2.342637e-148
1.171319e-147
Chromosome 11
3916.17204
29
9e-41
1.588235e-40
Chromosome 12
364.12002
29
1.303250e-59
3.554318e-59
Chromosome 13
115.85970
29
2.452031e-12
3.343679e-12
Chromosome 14
318.20690
29
1.993849e-50
4.984623e-50
Chromosome 15
1046.30900
29
1.400413e-201
8.402478e-201
Chromosome 16
38.83374
29
0.1048893
1.290222e-01
Chromosome 17
0.71038
29
0.998329325823115
9.983293e-01
Chromosome 18
289.31650
29
1.044957e-44
2.411439e-44
Chromosome 19
0.00022
29
0.998329325823115
9.983293e-01
Chromosome 20
38.49010
29
0.1118192
1.290222e-01
Chromosome 21
49.85398
29
0.00936436
1.221438e-02
Chromosome 22
520.41682
29
1.816919e-91
6.056397e-91
Chromosome 23
396.44704
29
3.901303e-66
1.170391e-65
Chromosome 24
1487.22530
29
2.889277e-295
8.667831e-294
Chromosome 25
578.70164
29
1.670997e-103
6.266239e-103
Chromosome 26
0.18348
29
0.998329325823115
9.983293e-01
Chromosome 27
640.07944
29
3.047584e-116
1.306107e-115
Chromosome 28
1213.39680
29
5.378423e-237
8.067634e-236
Chromosome 29
1100.63030
29
4.433235e-213
3.324926e-212
Chi-squared (χ2) test: Which of the 22 conformation traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Angularity
43.99169
21
0.002343969
3.222957e-03
Anogenital distance
33.33746
21
0.04260657
4.686723e-02
Body condition score
160.36983
21
1.839263e-23
1.348793e-22
Body form composite index
40.8008
21
0.005933819
7.679060e-03
Bone quality
70.05448
21
3.444043e-07
8.418772e-07
Conformation score
131.26541
21
5.902453e-18
2.597079e-17
Dairy capacity composite index
195.54646
21
2.718024e-30
2.989826e-29
Dairy form
101.91404
21
1.321570e-12
4.845757e-12
Dairy strength
49.31728
21
0.0004536337
7.128530e-04
Dairy type
25.86013
21
0.2118326
2.219199e-01
Ear length
35.70273
21
0.02360646
2.733380e-02
Ear size
392.59815
21
3.149259e-70
6.928370e-69
Hindquarter proportions
21.07438
21
0.4544098
4.544098e-01
Locomotion
61.62364
21
7.230479e-06
1.590705e-05
Loin strength
36.81349
21
0.01768306
2.161263e-02
Muscularity
59.49774
21
1.521020e-05
2.788537e-05
PTA type
47.19981
21
0.000882681
1.294599e-03
Presence of horns
93.85986
21
3.455417e-11
1.085988e-10
Rump angle
134.5311
21
1.450683e-18
7.978756e-18
Rump conformation
83.11887
21
2.415425e-09
6.642419e-09
Stature
59.71856
21
1.408652e-05
2.788537e-05
Structural soundness
57.53883
21
2.989072e-05
5.058430e-05
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
25297.360220
Number of traits:
22
df
=
609
Number of QTLs:
3,841
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
