Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of feed intake traits:
8
Number of QTL / associations found:
3,234
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are feed intake traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
815.06792
29
7.91747e-153
2.375241e-151
Chromosome 1
117.55400
29
1.273309e-12
1.527971e-12
Chromosome 2
12.15880
29
0.997442
9.999974e-01
Chromosome 3
42.03640
29
0.05573753
6.431253e-02
Chromosome 4
351.27568
29
4.952741e-57
9.905482e-57
Chromosome 5
351.27568
29
4.952741e-57
9.905482e-57
Chromosome 6
231499.99552
29
9e-41
1.285714e-40
Chromosome 7
302.07344
29
3.162945e-47
4.994124e-47
Chromosome 8
256.58184
29
2.685288e-38
3.661756e-38
Chromosome 9
460.81184
29
3.106531e-79
1.164949e-78
Chromosome 10
361.56144
29
4.261046e-59
9.833183e-59
Chromosome 11
155.66904
29
2.790097e-19
3.487621e-19
Chromosome 12
382.57808
29
2.484140e-63
6.210350e-63
Chromosome 13
572.08464
29
3.914337e-102
2.935753e-101
Chromosome 14
0.35920
29
0.998329325823115
9.999974e-01
Chromosome 15
35.26824
29
0.1958664
2.176293e-01
Chromosome 16
321.30912
29
4.814514e-51
8.496201e-51
Chromosome 17
292.67832
29
2.271528e-45
3.407292e-45
Chromosome 18
321.30912
29
4.814514e-51
8.496201e-51
Chromosome 19
162.54104
29
1.595696e-20
2.081343e-20
Chromosome 20
6.28128
29
0.9999974
9.999974e-01
Chromosome 21
302.07344
29
3.162945e-47
4.994124e-47
Chromosome 22
496.56696
29
1.460016e-86
6.257211e-86
Chromosome 23
533.65792
29
3.394611e-94
2.036767e-93
Chromosome 24
404.18848
29
1.054290e-67
3.162870e-67
Chromosome 25
508.78216
29
4.505537e-89
2.252769e-88
Chromosome 26
382.57808
29
2.484140e-63
6.210350e-63
Chromosome 27
681.08648
29
8.7563e-125
1.313445e-123
Chromosome 28
585.19032
29
7.570343e-105
7.570343e-104
Chromosome 29
426.39256
29
3.261021e-72
1.087007e-71
Chi-squared (χ2) test: Which of the 8 feed intake traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Average feeding rate
153.33047
7
8.106576e-30
1.621315e-29
Days on feed
118.91146
7
1.291059e-22
1.475496e-22
Dry matter intake
418.94576
7
2.058338e-86
8.233352e-86
Feed intake
149.81143
7
4.447472e-29
7.115955e-29
Feeding session interval
91.26354
7
6.805806e-17
6.805806e-17
Number of visits to feeder
128.14581
7
1.533234e-24
2.044312e-24
Residual feed intake
1035.83431
7
2.175752e-219
1.740602e-218
Time spent in feeder
190.041
7
1.470766e-37
3.922043e-37
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
241140.987040
Number of traits:
8
df
=
203
Number of QTLs:
3,234
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
