Trait centric view

1. Trait name:	Udder height
   Ontology terms:	VT:0010030, CMO:0000415

   164 genes are associated with this trait, with QTL/association found

   • ACOXL: Acyl-CoA oxidase like
     evidenced by: QTL:45068;
   • ADAMTS16: ADAM metallopeptidase with thrombospondin type 1 motif 16
     evidenced by: QTL:50954;
   • ADAMTS17: ADAM metallopeptidase with thrombospondin type 1 motif 17
     evidenced by: QTL:50963; QTL:50978;
   • ADAMTS6: ADAM metallopeptidase with thrombospondin type 1 motif 6
     evidenced by: QTL:50603;
   • ADCY3: Adenylate cyclase 3
     evidenced by: QTL:45551; QTL:45565;
   • AFF2: AF4/FMR2 family member 2
     evidenced by: QTL:54504;
   • ALMS1: ALMS1 centrosome and basal body associated protein
     evidenced by: QTL:45132;
   • AMOT: Angiomotin
     evidenced by: QTL:54705;
   • ANKRD17: Ankyrin repeat domain 17
     evidenced by: QTL:42322;
   • ANXA4: Annexin A4
     evidenced by: QTL:45042;
   • AP3B1: Adaptor-related protein complex 3, beta 1 subunit
     evidenced by: QTL:44336;
   • ARHGAP10: Rho GTPase activating protein 10
     evidenced by: QTL:48700;
   • ARHGAP6: Rho GTPase activating protein 6
     evidenced by: QTL:55465;
   • ARRDC3: Arrestin domain containing 3
     evidenced by: QTL:147117;
   • ATP1A3: ATPase Na+/K+ transporting subunit alpha 3
     evidenced by: QTL:49737;
   • BAZ2B: Bromodomain adjacent to zinc finger domain 2B
     evidenced by: QTL:39388;
   • BCAS3: BCAS3 microtubule associated cell migration factor
     evidenced by: QTL:50031;
   • BDP1: B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
     evidenced by: QTL:50529;
   • BMP5: Bone morphogenetic protein 5
     evidenced by: QTL:51978;
   • BTBD11: BTB domain containing 11
     evidenced by: QTL:41140;
   • C3H1ORF87: Chromosome 3 C1orf87 homolog
     evidenced by: QTL:40020;
   • CAPN3: Calpain 3, (p94)
     evidenced by: QTL:44594; QTL:44608;
   • CCDC141: Coiled-coil domain containing 141
     evidenced by: QTL:39053;
   • CD9: CD9 molecule
     evidenced by: QTL:41562;
   • CDH6: Cadherin 6
     evidenced by: QTL:50303;
   • CERS6: Ceramide synthase 6
     evidenced by: QTL:39112;
   • CFAP43: Cilia and flagella associated protein 43
     evidenced by: QTL:52831;
   • CGNL1: Cingulin like 1
     evidenced by: QTL:44772;
   • CHN2: Chimerin 2
     evidenced by: QTL:40457;
   • CHRM3: Cholinergic receptor muscarinic 3
     evidenced by: QTL:53739;
   • CLEC16A: C-type lectin domain containing 16A
     evidenced by: QTL:52492;
   • CNTN5: Contactin 5
     evidenced by: QTL:47789;
   • COBLL1: Cordon-bleu WH2 repeat protein like 1
     evidenced by: QTL:39240;
   • COL12A1: Collagen type XII alpha 1 chain
     evidenced by: QTL:51964;
   • COL4A1: Collagen type IV alpha 1 chain
     evidenced by: QTL:46570;
   • CPAMD8: C3 and PZP like alpha-2-macroglobulin domain containing 8
     evidenced by: QTL:42682;
   • CPEB3: Cytoplasmic polyadenylation element binding protein 3
     evidenced by: QTL:52672;
   • CPQ: Carboxypeptidase Q
     evidenced by: QTL:47689;
   • CRTC1: CREB regulated transcription coactivator 1
     evidenced by: QTL:42645;
   • CUL2: Cullin 2
     evidenced by: QTL:46819;
   • DOCK1: Dedicator of cytokinesis 1
     evidenced by: QTL:53119;
   • DOT1L: DOT1 like histone lysine methyltransferase
     evidenced by: QTL:42857;
   • DTNA: Dystrobrevin alpha
     evidenced by: QTL:52359;
   • DYSF: Dysferlin
     evidenced by: QTL:45159;
   • EBF1: EBF transcription factor 1
     evidenced by: QTL:43253;
   • FAS: Fas (TNF receptor superfamily, member 6)
     evidenced by: QTL:52658;
   • FAT3: FAT atypical cadherin 3
     evidenced by: QTL:53878;
   • FBF1: Fas binding factor 1
     evidenced by: QTL:50133;
   • FER1L5: Fer-1 like family member 5
     evidenced by: QTL:45088;
   • FHIT: Fragile histidine triad diadenosine triphosphatase
     evidenced by: QTL:51696; QTL:51725;
   • FLT4: Fms related receptor tyrosine kinase 4
     evidenced by: QTL:42626;
   • FRMD5: FERM domain containing 5
     evidenced by: QTL:51352;
   • GABARAPL1: GABA(A) receptor-associated protein like 1
     evidenced by: QTL:41525;
   • GABRR3: Gamma-aminobutyric acid type A receptor rho3 subunit
     evidenced by: QTL:38369;
   • GALNT2: Polypeptide N-acetylgalactosaminyltransferase 2
     evidenced by: QTL:53650;
   • GANC: Glucosidase alpha, neutral C
     evidenced by: QTL:44580;
   • GARS1: Glycyl-tRNA synthetase 1
     evidenced by: QTL:40443;
   • GC: Group-specific component (vitamin D binding protein)
     evidenced by: QTL:95582;
   • GOLT1A: Golgi transport 1A
     evidenced by: QTL:48059;
   • GPHN: Gephyrin
     evidenced by: QTL:44946;
   • GPM6B: Glycoprotein M6B
     evidenced by: QTL:55446;
   • GRIA3: Glutamate ionotropic receptor AMPA type subunit 3
     evidenced by: QTL:54177; QTL:54194;
   • GRIK2: Glutamate ionotropic receptor kainate type subunit 2
     evidenced by: QTL:44002;
   • GSTO2: Glutathione S-transferase omega 2
     evidenced by: QTL:52847;
   • HPCAL1: Hippocalcin like 1
     evidenced by: QTL:45982;
   • ITPK1: Inositol-tetrakisphosphate 1-kinase
     evidenced by: QTL:51430;
   • JAK1: Janus kinase 1
     evidenced by: QTL:39925; QTL:39946;
   • KCNIP1: Potassium voltage-gated channel interacting protein 1
     evidenced by: QTL:50361;
   • KCNIP4: Kv channel interacting protein 4
     evidenced by: QTL:41973;
   • KCTD2: Potassium channel tetramerization domain containing 2
     evidenced by: QTL:50156;
   • LETM1: Leucine zipper and EF-hand containing transmembrane protein 1
     evidenced by: QTL:42564;
   • LIN7A: Lin-7 homolog A, crumbs cell polarity complex component
     evidenced by: QTL:40745; QTL:40763;
   • LMO7: LIM domain 7
     evidenced by: QTL:46424;
   • MAGI1: Membrane associated guanylate kinase, WW and PDZ domain containing 1
     evidenced by: QTL:51654;
   • MAPKBP1: Mitogen-activated protein kinase binding protein 1
     evidenced by: QTL:44551;
   • MGMT: O-6-methylguanine-DNA methyltransferase
     evidenced by: QTL:53260;
   • MID1: Midline 1
     evidenced by: QTL:55498;
   • MRC2: Mannose receptor C type 2
     evidenced by: QTL:49987;
   • MSGN1: Mesogenin 1
     evidenced by: QTL:45668;
   • MYBPC1: Myosin binding protein C, slow type
     evidenced by: QTL:40992;
   • NBAS: NBAS subunit of NRZ tethering complex
     evidenced by: QTL:38382; QTL:45747; QTL:45762;
   • NCOA1: Nuclear receptor coactivator 1
     evidenced by: QTL:45578;
   • NEDD4: Neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase
     evidenced by: QTL:44793;
   • NELFA: Negative elongation factor complex member A
     evidenced by: QTL:42600;
   • NHS: NHS actin remodeling regulator
     evidenced by: QTL:55245;
   • NMUR1: Neuromedin U receptor 1
     evidenced by: QTL:39632;
   • NPR3: Natriuretic peptide receptor 3
     evidenced by: QTL:50775;
   • NPSR1: Neuropeptide S receptor 1
     evidenced by: QTL:40403;
   • NRG3: Neuregulin 3
     evidenced by: QTL:53794; QTL:53810;
   • NRP1: Neuropilin 1
     evidenced by: QTL:46895;
   • NSD2: Nuclear receptor binding SET domain protein 2
     evidenced by: QTL:42584;
   • NT5E: 5'-nucleotidase, ecto (CD73)
     evidenced by: QTL:44086;
   • NYAP2: Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2
     evidenced by: QTL:39566;
   • OSBPL10: Oxysterol binding protein like 10
     evidenced by: QTL:51565;
   • OSR1: Odd-skipped related transcription factor 1
     evidenced by: QTL:45631;
   • OTOP3: Otopetrin 3
     evidenced by: QTL:50170;
   • PAH: Phenylalanine hydroxylase
     evidenced by: QTL:41020;
   • PAK5: P21 (RAC1) activated kinase 5
     evidenced by: QTL:46631;
   • PARD3: Par-3 family cell polarity regulator
     evidenced by: QTL:46849;
   • PDE4D: Phosphodiesterase 4D
     evidenced by: QTL:50699; QTL:50719;
   • PER2: Period circadian regulator 2
     evidenced by: QTL:40310;
   • PHEX: Phosphate regulating endopeptidase homolog X-linked
     evidenced by: QTL:55157; QTL:55171;
   • PHKA2: Phosphorylase kinase regulatory subunit alpha 2
     evidenced by: QTL:55223; QTL:55233;
   • PITRM1: Pitrilysin metallopeptidase 1
     evidenced by: QTL:47112;
   • PLA2G4F: Phospholipase A2 group IVF
     evidenced by: QTL:44565;
   • PLAG1: Pleiomorphic adenoma gene 1
     evidenced by: QTL:214794; QTL:214876; QTL:95593;
   • PLCB1: Phospholipase C beta 1
     evidenced by: QTL:46618;
   • PLCD3: Phospholipase C delta 3
     evidenced by: QTL:50059;
   • PLCH1: Phospholipase C eta 1
     evidenced by: QTL:38690;
   • PMP22: Peripheral myelin protein 22
     evidenced by: QTL:49974;
   • PRDM16: PR domain containing 16
     evidenced by: QTL:48338;
   • PRIM2: DNA primase subunit 2
     evidenced by: QTL:51908;
   • PRKD1: Protein kinase D1
     evidenced by: QTL:51188; QTL:51201; QTL:51214;
   • PRKG1: Protein kinase, cGMP-dependent, type I
     evidenced by: QTL:52649;
   • PRLHR: Prolactin releasing hormone receptor
     evidenced by: QTL:52916;
   • PRRX2: Paired related homeobox 2
     evidenced by: QTL:46111;
   • RAB15: RAB15, member RAS oncogene family
     evidenced by: QTL:44931;
   • RAD51: RAD51 recombinase
     evidenced by: QTL:44474;
   • RASA3: RAS p21 protein activator 3
     evidenced by: QTL:46583;
   • RBMS1: RNA binding motif single stranded interacting protein 1
     evidenced by: QTL:39377;
   • REN: Renin
     evidenced by: QTL:48046;
   • RFX4: Regulatory factor X4
     evidenced by: QTL:41104;
   • RNF10: Ring finger protein 10
     evidenced by: QTL:49404;
   • RNF157: Ring finger protein 157
     evidenced by: QTL:50092;
   • ROCK2: Rho associated coiled-coil containing protein kinase 2
     evidenced by: QTL:45909; QTL:45923;
   • ROR1: Receptor tyrosine kinase like orphan receptor 1
     evidenced by: QTL:39975;
   • RPAP1: RNA polymerase II associated protein 1
     evidenced by: QTL:44539;
   • RSPO2: R-spondin 2
     evidenced by: QTL:47656;
   • SEC63: SEC63 homolog, protein translocation regulator
     evidenced by: QTL:43972;
   • SFXN4: Sideroflexin 4
     evidenced by: QTL:52983;
   • SH2D2A: SH2 domain containing 2A
     evidenced by: QTL:39751;
   • SHROOM2: Shroom family member 2
     evidenced by: QTL:55640; QTL:55648;
   • SLC25A13: Solute carrier family 25 member 13
     evidenced by: QTL:40337;
   • SLC25A21: Solute carrier family 25 member 21
     evidenced by: QTL:51290;
   • SLC39A10: Solute carrier family 39 member 10
     evidenced by: QTL:39477;
   • SLC6A1: Solute carrier family 6 member 1
     evidenced by: QTL:51835;
   • SLIT3: Slit guidance ligand 3
     evidenced by: QTL:50322; QTL:50341;
   • SMOC1: SPARC related modular calcium binding 1
     evidenced by: QTL:44959;
   • SNX29: Sorting nexin 29
     evidenced by: QTL:52513;
   • SOWAHB: Sosondowah ankyrin repeat domain family member B
     evidenced by: QTL:42351;
   • SPATA3: Spermatogenesis associated 3
     evidenced by: QTL:39611;
   • SPRED2: Sprouty related EVH1 domain containing 2
     evidenced by: QTL:45498;
   • SRGAP2: SLIT-ROBO Rho GTPase activating protein 2
     evidenced by: QTL:48106;
   • SRP68: Signal recognition particle 68
     evidenced by: QTL:50107;
   • SUN2: Sad1 and UNC84 domain containing 2
     evidenced by: QTL:41579;
   • SYN3: Synapsin III
     evidenced by: QTL:41188; QTL:41209; QTL:41228;
   • TANK: TRAF family member associated NFKB activator
     evidenced by: QTL:39348;
   • TASP1: Taspase 1
     evidenced by: QTL:46769;
   • TEN1: TEN1 subunit of CST complex
     evidenced by: QTL:50122;
   • TIMP2: TIMP metallopeptidase inhibitor 2
     evidenced by: QTL:50077;
   • TLN2: Talin 2
     evidenced by: QTL:44744;
   • TMEM87B: Transmembrane protein 87B
     evidenced by: QTL:45053;
   • TRIM23: Tripartite motif containing 23
     evidenced by: QTL:50588;
   • TTYH2: Tweety family member 2
     evidenced by: QTL:50199;
   • UBE2E2: Ubiquitin conjugating enzyme E2 E2
     evidenced by: QTL:53618;
   • UBR1: Ubiquitin protein ligase E3 component n-recognin 1
     evidenced by: QTL:44623; QTL:44637;
   • UNC5D: Unc-5 netrin receptor D
     evidenced by: QTL:53516;
   • WDFY3: WD repeat and FYVE domain containing 3
     evidenced by: QTL:42484;
   • WWC3: WWC family member 3
     evidenced by: QTL:55584; QTL:55602;
   • XRCC4: X-ray repair cross complementing 4
     evidenced by: QTL:43319; QTL:43331;
   • ZBTB39: Zinc finger and BTB domain containing 39
     evidenced by: QTL:40972;
   • ZNF280D: Zinc finger protein 280D
     evidenced by: QTL:44783;
   • ZNF404: Zinc finger protein 404
     evidenced by: QTL:49783;
   • ZNF891: Zinc finger protein 891
     evidenced by: QTL:49232;
   354 correlations are found involving Udder height